
Continuity mistake: During the scene where Indy and Marcus are with the Army intelligence agents, watch the agent who is wearing the light blue suit - at the moment when Marcus refers to a secret chamber, the agent in the blue suit has his right hand resting on top the chair that he is sitting on, but in the next shot when he replies "secret chamber" his right hand is now on his face. (00:17:55)

Continuity mistake: When Indy is packing his suitcase to go to Nepal, he picks up a gun that is wrapped in a piece of cloth, he tosses the gun with his left hand into his right hand and begins to unwrap the gun from the cloth by raising his right hand, so that the gun will fall into his left hand, but the gun ends up falling into Indy's right hand instead of his left hand. (00:22:10)

Continuity mistake: When Indy is deciphering the object with the old man, there is a telescope behind them. It changes orientation between shots. (00:48:15)

Revealing mistake: After Marion goes in the basket, there is a chase and a truck tips over, if you look amidst the dust, you can see the ram used to put the vehicle on its side.

Continuity mistake: In the market chase scene Marion is confronted by a guy with a knife. In some shots the sharp edge is facing upwards, in others it's downwards. (00:39:10)

Revealing mistake: When Indy goes through the windscreen in the scene where he is fighting the balding blonde German, the stunt double playing the German has a full head of brown hair. (01:27:10)

Continuity mistake: There's a shot of the plane at the beginning, taken from the front, looking down the length of the body, where there's no writing on the side. (00:11:45)
Suggested correction: On a good quality frame the number is visible quite clear. Not visible on a poor resolution frame.

Continuity mistake: When Indy is chasing after the truck on horseback, he jumps off the horse and onto the truck, as he does this the horse begins to slow down and fall behind, but as Indy throws the German soldier in the passenger seat out of the truck the horse has disappeared, it could not have been hidden from view behind the truck, because the horse's shadow would have been visible. (01:23:30)

Continuity mistake: When Belloq grabs the machine gun, his left hand is on the trigger and his right hand on the gun cartridge as he turns round with his back to the camera, but in the next shot, his right hand is on the trigger and his left hand on the cartridge but in the next shot, his hands have changed position once more, this time left hand on the trigger and right hand on the cartridge. (01:42:55)

Continuity mistake: When Indy is running through the streets of Cairo looking for the men carrying Marion in a basket, the sweat stain on the back of his shirt shrinks and grows. (00:40:35)

Continuity mistake: Several times during the fight in and around the truck the bars around the top of the cab come off and are miraculously back on again. (01:24:05)

Continuity mistake: The position of the Top Secret sign and the whole text is put on the ark's box across vertically laid planks, with a wood crossbar on the right, which only the side panels have. A shot later the sign appears slanted across horizontally laid planks. Though it could be argued that there could be a second sign on the opposite side with horizontal planks, when the warehouse guy turns left to store the crate, we get a glimpse of the left side and it's not painted.
Suggested correction: The other text and the different plank design could be on the base of the box or on the front wall (the wall opposite the man pushing the box), two walls we never see when the box is being pushed. In fact, at one point the camera passes next to a box that has two texts, one on a short wall and one on a long wall.

Factual error: During the travel to Nepal, "Thailand" is written on the map. The country has had this name only since 1939. This film takes place in 1936, when Thailand was called Siam. (00:23:20)

Revealing mistake: When Indy is fighting the big German at the base of the airplane, Indy reaches down and grabs a handful of sand to throw in his face. You can see the finger marks in the sand from a previous take.

Continuity mistake: After Indy replaces the idol for a bag filled with sand, the position of the bag changes between frames.

Continuity mistake: When Indy climbs onto the pontoon of the airplane from the lagoon in the opening sequence, he is obviously wet from swimming in the lagoon. However, in the next scene as he climbs further, his clothes are miraculously dry as observed by watching them blowing freely during take-off. (00:12:05)

Continuity mistake: Indy looks at the Wurffler through the binoculars. In the next shot, when he takes them off and looks at Katanga, the submarine has moved to the left and astern. (01:34:58)

Revealing mistake: When Belloq's head explodes, the actor has been visibly replaced by a dummy.

Continuity mistake: When Indy and Brody meet at the University with the two government officials, a group of rolled maps or plans are placed on a podium horizontally. Halfway through the scene, they are all laying vertically.

Revealing mistake: When the Nazis are about to glow (and die), check the one on our left. His shirt is already unbuttoned right where the light will subsequently glow (which was a mere light bulb). A second later, he triggers a device clutched in his right hand (seemingly a switch) seconds before his chest lights up. (01:47:25)