Stupidity: While Tommy and Snake Eyes are trying to escape the docks in the truck, the Yakuza men surround the truck and stab over a dozen swords in all parts of the cab. Not one of the men ever thinks to use their sword to slash the tires, allowing the heroes to make an easy escape.
Stupidity: To save the people from rubble falling on their heads Flash does not move them aside like he did with his future love, but does some strange manoeuvre which takes seconds - since we see people moving normally - and happens in midair (how does he get there?) and that does not take care of a huge chunk of concrete which he does nothing about, shouting just "No!", but Cyborg has all the time he needs to load his Mega Man arm and vaporize it in midair. (02:00:00)
Stupidity: When the rebel leader talks to Rick Flag guaranteeing her help, she mentions that she will help to find "this Gaius Grieves", speaking as if it was someone unknown to her. He's been around the island (going to bars and surely not being reclusive) for 30 years; it's pretty difficult to think it would not be one of the most known people on the island, given his role, unique appearance and the small community.
Stupidity: When the crew think that Dorothy is a robot with a bomb planted in her and is capable of exploding, they begin to think that she is about to explode and attempt to dodge it. Rather than hide somewhere or take cover behind an area that may protect them, they just get down on the floor in front of them and cover their heads with their hands. If they thought the explosion was going to be as deadly as the one they saw on the news, this method of taking cover wouldn't be even remotely effective. (00:24:40)
Stupidity: Right before the movie's final battle, Sub-Zero taunts Cole with his wife's necklace and makes him chase him into a portal. Sonya was right next to Cole, and she did not come along with him. They had previously planned to take on Sub-Zero together, but apparently she just left him to chase Sub-Zero alone to an unknown location.