The Red Door - S2-E9
Continuity mistake: When Big Jim communicates to the military commander at the dome, he writes on his notepad, and shows "Me and my son" to the commander; yet when he returns to his car and looks at it again, it's written quite differently. (00:24:05 - 00:24:45)
Continuity mistake: When Agent Ward goes onto the aircraft to find Agent Fitz and Agent Simmons having an argument, Simmons put a cup of coffee on the desk. It vanishes from the desk a few seconds after she does this. (00:15:40)