Stupidity: When Colonel Hardy is about to crash the ship he's flying into a building, Faora sees it and she has more then enough time to leave the ship and get to safety, but she does nothing and just stands there.
Stupidity: They go to great pains to lock the nodes behind an explosive lock, then have a debate about whether Riddick's somehow broken in. They eventually unlock them, check they're still in place...then just leave the locker completely unattended and unlocked while they discuss plans, and Riddick of course steals the nodes.
Stupidity: Throughout the movie, and especially up on the top of the apartment building before they get rescued at the beginning of the movie, Gerry counts 12 seconds to check if someone has been infected. Just to mention this apartment example, he gets blood on his face and spends more than 12 seconds getting up and to the edge of the roof, plenty of time to become "Zeke." He then counts 12 seconds, as if they would actually matter to his infection.