Character mistake: It's all very heroic and manly but the effort put into dragging the Phoenix into its takeoff position once the engine is started is totally wasted. Townes and A.J. are both experienced pilots and Elliott is supposedly a genius aeronautical engineer - they must surely be aware that the engine power required to taxi an aircraft is trivial compared to that required to lift it into the air. Even taking into account the drag of the skids and wheels, if that engine cannot propel the aircraft at a few kilometers an hour on the ground it cannot propel it to take off speed, nor keep it up once airborne. They are not there to steer the aircraft - they are taking the strain of the whole weight of the air-frame, dragging it into place, and the energy input of eight exhausted, underfed people would add nothing to the contribution of a 2500 bhp aircraft engine in moving the Phoenix. They are not trying conserve fuel - they had enough fuel for an extended flight with both engines at full throttle, so they have easily enough to run one engine throttled back to reduce stress on the air-frame, which they say they are going to do.
Character mistake: When Jack arrives in New York he's right next to the Statue of Liberty. However when he reaches the library he comes from the East River and walks west. That is a pretty big detour around the southeastern corner of Manhattan, instead of taking the direct route. (01:47:00 - 01:48:20)
Suggested correction: Easier to walk in an open area and have a short distance walking between buildings rather than walking through the city where the terrain may not be the best even with the snow/ice.
Character mistake: After the robots first attack New York City, a series of newspapers is shown. One of the headlines in the French one reads "La Tour Eiffeil est détruite". The proper spelling is "Eiffel" (00:15:55)
Character mistake: Nick states that Wall Street was originally a wall (correct) built to defend against the British (incorrect). The original wall was a wooden palisade built in the 16th Century to defend the Dutch colonists against invading natives and to prevent livestock from wandering uptown.
Character mistake: In the start of the film, the sticker on Peter's head for his work misspells the word Bleecker Street on it.
Character mistake: At their wedding, the Priest announces Jack and Linda as Mr & Mrs Morris, instead of Morrison. (00:37:45)
Suggested correction: He says Morrison clear as day.
Character mistake: The mother is supposed to be American, but she speaks in her native Australian accent near the end when she says, "I don't think I can take anymore of this" upon finding out that Pita may be alive.
Character mistake: When Marie joins Bourne in the bathroom while he's getting medicine, Marie says he's burning up. She gets a washcloth, wets it and dabs Bourne's neck. She only had what couldn't have any more than a tablespoon of water and dabbled it less than a few seconds. It couldn't have had any effect on someone who was burning up.
Character mistake: Jill states that a 5 kiloton nuclear weapon will sanitise the city, however, such a yield is far too small to destroy the city. (00:42:00)
Character mistake: Flynn has been reading for a while, taking notes, spreading books around, etc. - when Nicole arrives and says that it was nice to watch take-off from the cockpit. The plane must have been in the air for a long time by then.
Character mistake: Tom Manning criticises Hellboy for using a lighter, (correctly) telling him to use a wooden match instead. But he then lights a match and immediately puts it to the cigar, instead of waiting for the sulphur to burn off and using a pure wood-fuelled flame to light it. He's not as well informed as he thinks.
Character mistake: When Howard's men bail the guy out who was with Bobby Saint at the arms deal, they are beating him up in Saint's club. Howard Saint (John Travolta) shoots the man responsible for not watching his son. The man fall down to his knees and then says the name John instead of Howard.