Clash!! Sonic VS Knuckles - S1-E5
Revealing mistake: Right at the end of the episode, when Amy is telling Knuckles he should apologize, Amy has two right hands.
Lightspeed - S5-E8
Revealing mistake: When the HIVE Five exit the museum and are intercepted by Kid Flash, Mammoth loses both his pants and the artifacts he has before KF whizzes past him. It's best seen in slow motion; at normal speed this mistake is hard to catch.