Revealing mistake: When Kyle, Elizabeth and Robin are in the truck being chased by Mr. Chiang, in all the outside shots of the truck it is very easy to see that all three of them have been replaced by doubles. (00:09:05)
Other mistake: When Spike is thrown out of the base by Megatron at the end of the episode, Optimus calls him 'Splik'.
Give Me Your Princess - S1-E17
Continuity mistake: Commander Keith pilots the blue lion for part of this episode since the princess is trying to learn to fly the black lion. When Keith is transported to the lion it is the black lion.
The White Mountains: November, 2089 AD - S1-E13
Plot hole: The main characters are being pursued by Tripods, mind controlling alien machines. My question is, if the Tripods can turn humans into 1600's puppets, complete with foxhunts, why don't they make some of said mind-controlled humans help with the pursuit?