Continuity mistake: At Skull Rock, after the crocodile has nipped off a good bit of Hook's clothing, sock and shoe, when Hook rushes toward Smee in the boat the crocodile opens his mouth, and just as he swallows Hook he's nearly fully clothed and wearing both socks and both shoes.
Continuity mistake: While the close-ups showed heavy ice build-up on the doomed plane, the long shots showed no ice at all.