Plot hole: There's no way that Eddie and Nana left the flooded theater without getting a single drop of water on them. The water flooded up to the ceiling and there's no other way to exit besides the front doors, and Moon's secret exit, which also floods. They do not leave through either way.
Plot hole: The newspaper headline showing young Alex being rescued from a crate is dated April 8, 1972. In the next scene, we see young Alex dancing in the Central Park Zoo, and watching him are Marty, Melman and Gloria as baby animals. This makes no sense at all. In the first film, Marty celebrates his tenth birthday. Key word: tenth. It is also known that the scenes of the main characters as adults take place in the present i.e. Alex confessing to breaking Marty's iPod. Seeing how the animals age quicker than humans, Marty, let alone his three friends, would have to have been born in the mid-1990s and the flashback scenes could not have taken place in 1972.
Plot hole: There is no reason for there to be sinks in the bathrooms. The cars may be able to use sinks just as they use toilets, but in the bathrooms they are too small and too inaccessible for any use.
Plot hole: When Butthead pushes Beavis out of Muddy's car, Beavis causes a huge car crash. Then, a few seconds later Butthead falls out and causes cars behind him to crash, but the crash that Beavis started made a barrier along the highway, so how could those cars get behind Butthead so fast? (00:51:50)
Plot hole: As shown when Robin comes under the influence of Slade's mind control device, the hypnotized people retain their abilities and higher intelligence, just with a loyalty to Slade. That being said, when Slade hypnotizes all the DC heroes, Superman and The Flash are among them in the theater. Slade orders all the heroes to chase after and destroy the Teen Titans. The Titans take off on foot with the others running after them and are able to keep their distance in a big chase sequence. Superman and The Flash never use their super speed to over take the Titans, which would have been so very easy.
Plot hole: When Ginger and Rocky escape from being made into a pie, it cuts to them back in the chicken coop. The movie is based on being unable to escape the coop, yet they can get back in no problem.
Suggested correction: We see how Rocky got in the barn, and it's not far from their chicken coop. You really think they would escape without the others and think nothing of it? Also, as stated above, we don't see exactly HOW they got back, so how exactly is this a plot hole?
Plot hole: There's no visible evidence that Team Rocket has taken away Ash, Misty, and Brock's Poké Balls when the gang was in the cage, so why don't the Trainers call out their Pokémon (Brock's Onix would've helped out very much) and escape the cage?
Plot hole: They go and buy Anne Marie a whole new wardrobe. So, how come in the remainder of the movie she continues to wear her old rags?
Plot hole: At the end of the movie, when the water drains away, there would be no way for a) the amount of water to drain away that did and b) for the mammoths that came through to be completely dry. (01:16:20)
Plot hole: There is no possible way for the chubby mayor to be able to get in Flint's lab. There is no side entry, and the space other characters use to get in is too tight for him.
Plot hole: At the end of the movie, when Lonette comes across Frank's dead body, she asks Nails what happened. Nails tells Lonette that he was pushed off a building by Holly Wood. Lonette then asks if Holly was in doodle form when she killed Frank. Nail says she was. There would be no way for Nails to know either of these things as he was trapped in the fountain pen when Frank died and wasn't released until the Spike Of Power was removed.
Plot hole: When the aliens kidnap the adults, the kids are left behind. But all the kids seen are around 11 and younger. Where are the teenagers or young adults? None of them are during the celebration scene nor in the arena on the alien planet.
Plot hole: It would have taken much longer to build the 54 acres of homes than the animals hibernated, so there's no way they couldn't have known what was going on around them.
Plot hole: When Tinkerbell tries to find Gruff in winter, she's seen flying with her wings out of her coat; in a later scene, Fawn flies too. After Tink finds Gruff, her wings disappear from underneath her coat. This is a plothole because of how the whole storyline of Secret of the Wings was that warm fairies can't fly in winter weather or their wings will tear.
Suggested correction: Yeah but at the end of Secret of the Wings, they find a way to let any fairy fly in winter.
Plot hole: In the scene where bad cop says "security cameras picked up this" it shows the footage of Emmet "convulsing with the strange piece." If they had cameras down there, then they would've already found the piece of resistance. (00:08:10 - 00:10:10)
Plot hole: When the asteroid first approaches Earth it does so very quickly, but then it takes hours to finally enter the atmosphere and land on Susan.
Plot hole: Gerry's wife uses a rocket boot to break through a window and then slides down a curved wall to get to their son. She does so gracefully and takes off running. Gerry slides and takes a hard tumble and rolls down, landing on the ground. The next shot shows Gerry running behind his wife and not too far away as they reach their son. Even if it was to show a little time passing, there was not enough distance between where they broke the window and their son for Gerry to have picked himself up and catch up to his wife before reaching their son, especially with his wife being a worried mom doing a full on sprint to her kid.