Stupidity: When the crew go to New York they are in the back of a fish truck carrying fish. There's no need for them to do that. So long as the truck looks normal outside to keep their cover, they could have the inside kitted out any way they want. When they get to the fish factory they open up the warehouse in front of the workers to reveal the cars, so the workers are in on it being a front - it makes no sense to actually have fish in the back of the truck.
Stupidity: The villain has a couple dozen able men fully equipped with lights (plus vehicles, obviously), but instead of using them to run after the kid who has a minute tops head start on him and is running blindly in soaked mud fields on her little legs, he uses his manpower to clean up the road from blood, spikes and various other traces of the precise location of the shootout. Rather pointless move since the feds are gonna come anyway in the area because of the communication loss with the convoy, with a decent approximation of their position. It appears unbelievable that he would have his priorities so wrong and just leave the girl to run free like that.