Plot hole: There's no way that Eddie and Nana left the flooded theater without getting a single drop of water on them. The water flooded up to the ceiling and there's no other way to exit besides the front doors, and Moon's secret exit, which also floods. They do not leave through either way.
Plot hole: In multiple scenes in the movie the starship is in a gentle rotation which allows 1G gravity on the ship. When the power to the propellant is cut the rotation stops and gravity is lost. Such a design for a starship doesn't make sense as the entire structure could be put in a continuous motion, as is indeed done with many probes today without requiring the continuous addition of power. Even if this design was chosen with part of the structure fixed and party of it moving around it still seems unlikely that the rotating part would come to a grinding halt within seconds (if it did, the friction of the structure would be huge, requiring enormous levels of energy to keep it moving) The only reason the movie chooses this unlikely design is to integrate the crucial shot of Aurora floating out of the pool when power is first lost.
Suggested correction: There are parts spinning with different speeds and directions. Spinning an entire solid ship wouldn't allow for things like that. Regardless, we can't say which starship designs make sense or not. The ship has a reactor with seemingly endless energy, so powering the rotation is not a problem. The sudden stop is because whatever spins the ship has lost power. If you try to turn an unpowered motor or engine, especially if geared, you will feel resistance because the mechanism is acting as a brake.
Plot hole: The system providing oxygen can only be accessed by someone slim. Therefore John Goodman built the bunker with him unable to access the key facility that provides oxygen in his bunker. Yet he must have been able to go and get Britney when she went to that area?
Suggested correction: It's not a plot hole because he said in the film, the normal hatch to the air filtration was blocked by something that fell on top so they couldn't get through that way.
Plot hole: RAF airfields were heavily guarded, yet Max drives up to a Lysander with wife and child, gets in and starts it without anyone stopping him before help turns up.
Plot hole: When Eddie Mannix first views scenes from the movie Hail Ceasar there is a scene depicting Saul of Tarsus (St Paul), but the movie-in-movie's climatic scene and speech are set at the crucifixion of Jesus which happened several years before the events depicted as happening to Saul / Paul.
Plot hole: The CIA is desperately trying to find Pope's contact, to the point of doing the crazy experimental brain surgery shipping over the ocean the one scientist that may perform it, and an inmate. But they don't have Pope's house under surveillance or his phone tapped, so they have no idea Strook called him. The fact that Strook not hearing back from Pope would try to contact him was quite literally the most obvious possible event. (00:31:00)
Plot hole: Rafe is not a supernatural being, and besides not suffering any fatigue at all missing his sleep to do his pranks, some are outright impossible to execute and perform overnight for a person of his age (most likely for an adult in their prime too). Covering the entire hall and corridors, plus the principal's office, with post-it stickers requires a ridiculous amount of stickers to begin with, and arranging them creatively covering the whole walls, floor to ceiling, so that they create drawings, is an insane concept. Even more insane when it's the opening prank, anything he does later in the movie including the big movie finale requires less labor and time than his first act did.