Deliberate mistake: When Peter and Miraz are fighting, Peter stabs Miraz and then brings the sword back up for the killing stroke. There is no blood on the sword. This is deliberate on the part of Disney, so as not to show blood, but a mistake nonetheless.
Deliberate mistake: When the Dragon Emperor is giving his Terracotta army the speech near the end, you see a shot that pans across the faces of several of his soldiers. A few shots later, this exact same shot is played in reverse. It is very easy to tell if you look at the way the camera moves up and down to catch the different faces.
Deliberate mistake: When Seth Green and Lance pull up to Ian and Felicia, the car being pulled by the carriage should roll a little bit after the carriage stops moving, but instead it stops on a dime when it is only being pulled by rope, and nothing else to stop it with when the carriage stops. (00:42:00)