Plot hole: (Ep. 5) The weapon Stephen finds in a desert is a H&K G36. He states that it's not a military weapon and is mainly a mercenary weapon. The G36 is used by several police and special forces units in the world, including the British SAS, which could suggest another nation's or British government branch's involvement. Comment was probably made to deepen the intrigue of the season plot.
Plot hole: When Justin and Juliet were trapped behind the glass and Juliet let herself be captured by the mummy, so she doesn't burn to ashes when the morning comes, why didn't Juliet just escape? The mummy gave her enough time to turn around and share a moment with Justin, she could've used that time to fight him off, break Justin out and escape. The mummy wasn't very strong and Alex would've shown up 20 seconds later anyway, there wasn't any real reason for Juliet to just let herself be taken away.
Plot hole: I believe in the very first episode, during the flashback when Mick remembers rescuing Beth and killing Coraline, we see him stab her with a wooden stake, which is supposed to paralyze a vampire, as said in the "Dr. Feel Good" episode. However when Mick looks back with Beth in his arms, Coraline suddenly gets up and watches him leave while burning to "death." This is simply not possible; in the "Dr. Feel Good" episode, Mick could not release the stake himself and asked Beth to do it. This also happened in the episode when Josef was staked by the hit man that was hired to kill him, (in the episode where we meet the woman, Sarah I believe, that he accidentally put into a coma after attempting to turn her). Again, Josef was unable to remove the stake himself and Mick had to do it for him, so there is absolutely no way Coraline would be watching Mick and Beth leave; she would still be on the ground possibly burning to death.