Character mistake: Brock states that the Diglett are plowing the ground and the Dugtrio are planting the trees, but the opposite is true (The Dugtrio are plowing, and the Diglett are planting).
Little Box of Horrors - S7-E18
Character mistake: Katya (as Nina) says that Pandora's Box is "a gift the gods gave to Prometheus." But the Box was given to Epimetheus, not Prometheus. Epimetheus ignored the warnings of Prometheus, his brother, and accepted Pandora herself, who bore a box, as a gift from the gods.
Champion vs. Creator, Part II - S1-E27
Character mistake: Pegasus says his toon world cannot be penetrated, but that is not true since it's a magic card, so any card that destroys magic cards can destroy it. Furthermore, monster special effects can also destroy it.