Stupidity: Monk steals the magazine from Coffey's SIG. However, I don't see how he could have jacked the slide to eject the round in the chamber without being noticed. Someone as paranoid as Coffey was at this point would not have left the chamber empty. (Just FYI, when you load an automatic pistol with a magazine, you have to pull back and release the slide to load the first bullet in the barrel.)
Suggested correction: Since we are never shown that Coffey did chamber a round, we cannot assume that he did based on his personality alone. Therefore this isn't a plot hole. However, it is ridiculous that he is threatening people with a gun without a chambered round. This entry should be listed as "Stupidity."
SEALs don't carry weapons without a round chambered. The "maybe" here falls much more on the side of the round being in the chamber. And "Stupidity" wasn't an option available when this entry was originally submitted. :).
Stupidity: Everyone laughs off any reference to the supernatural and the Ghostbusters being any more than hacks. However, they drilled a hole that unveiled a literal river of pink glowing goo that is even brought up at the trial; nobody investigates its origin or acknowledges the fact, which is exceedingly absurd since it involves heavy pollution of the underground system of a metropolis.
Stupidity: Any fighter pilot should know better than to attempt a low flying attack so close to a hill, let alone into a tunnel. How could he not know that it was there? How'd this moron even get his pilot's license?
Stupidity: Felix and the DEA capture Sanchez, a very powerful drug lord, in a very public way, have the wedding...then everyone just goes home. No concept of extra security or concern about his minions getting revenge. So of course they can then just wander into his house with no problems whatsoever to capture him and murder his wife. Bond's clearly concerned when he learns Sanchez has escaped, but he must have realised there'd be plenty of goons still around before that point.