Deliberate mistake: The way diplomatic immunity is depicted in the movie is extremely inaccurate. While technically a sufficiently ranking diplomat could perform the acts shown in the movie without being subject to arrest, their home government would be requested to turn the diplomats over for trial, or the diplomat would be declared persona non grata and expelled from the country. A drug smuggling ring and murdering multiple policemen is far, far more serious than actual crimes that diplomats have been expelled (or handed over for trial) for in the real world. Additionally, the consul general and his officers would not be considered diplomats. They would only have limited consular immunity with regards to "official acts" in the course of consular business.
Deliberate mistake: When Old Biff and Young Biff are sitting in Biff's car, the car's rear-view mirror vanishes during all shots of Old and Young Biffs together. Presumably this made the split-screen effect easier to do.
Deliberate mistake: While Indy is fighting the tank commander, he looks up to see them heading toward a cliff. After the tank goes over, from the time his companions look over the cliff to the time when they walk away and Indy is sitting on the ground, you can see the wind blowing in their faces. But as Indy starts to get up, the wind blows his hat toward him, which it couldn't do as his hat flew off quite a while before, and the winds would have blown it far from the cliff's edge.
Deliberate mistake: When Belloq, Dietrich, and Gobler arrive next to the destroyed Flying Wing, Eric Zala is on Dietrich's right and Gobler on Dietrich's left. In the next shot, they have switched places. This mistake actually exists at the same point in Raiders of the Lost Ark - recreating it was a deliberate choice.