Stupidity: The heroines guess the plan of the villain with a thought process that can only be explained by the fact that they read the movie script. There is no way for them to surmise that the attack on the Skrull base, perpetrated under subterfuge, was intended to "syphon away the atmosphere", and not just the usage of a really powerful weapon. Even assuming that Kamala's objection to this particular point ("they could have just invaded or used a bomb") is a logical explanation that would disqualify without a second thought the fact that a Kree warlord would use a terrifying and cost-free weapon that is also a symbol of Kree's culture just for its power, and so that it makes sense that the heroines just instantly commit to an alternative theory, there's still a leap of logic in assuming the exact next step for the Kree's quest on revitalizing their homeland (which incidentally involves randomly dumping out of the blue a gigantic quantity of salt water on a densely populated planet).
Stupidity: The bad guy who spies on Bosley is visible from the very beginning of the scene, when Elena is not even inside the cafe yet. The cafe does not have many customers and the bad guy is using a loud vintage typewriter with a big mirror mounted on top (!). The Angels are portrayed as being super smart and their setup is so careful, but somehow they managed to miss something amazingly obvious. Conversely, nobody would have ever paid attention to a laptop or any silent, modern-age device perhaps with a camera or something similar, so the bad guy chose the most blatantly conspicuous accoutrement for his spying job. Try showing up to a cafe punching the keys of a big clunky typewriter and literally everyone will be looking at you. (00:18:25)
Stupidity: During the gun battles with the "Tropic Thunder" actors, not one of the Flaming Dragon soldiers notice there is something strange about how the actors are firing their weapons (i.e, in the air, over the heads of the Flaming Dragons, etc.) or that there is no damage inflicted when the actors are shooting at or near objects in the area. Those two factors alone would tip off the Flaming Dragons that blanks were being used in the weapons of the actors.
Stupidity: After leaving the church in the painted Studebaker, the duo have Max and Hopper right behind them. Therefore, there's no way the (conveniently) colored car could possibly fool Max and Hopper.
Suggested correction: That was the whole point. It was supposed to be funny.
Stupidity: Darren could have easily grabbed Ben out of the locker he climbed into by just pulling. Instead, he pushes it inward, causing it to close and allowing Ben to either hold onto it on the inside or lock the locker itself.
Stupidity: After Corinne Dufour realises that Drax intends to have his dogs kill her, she inexplicably attempts to flee on foot, running right past the golf cart she arrived in. The golf cart would have given her more speed, range and protection, and would have been a much better choice for fleeing.
Suggested correction: Golf carts are very slow, and are open on all sides: the dobermans would've easily dragged her off it. The biggest stupidity here is that she should've fled to a crowded area with other people instead of the woods. Then again, she was panicking, and not thinking straight.
Stupidity: Gus is a blatant example of Deus Ex Machina. 1: The % of his pod malfuntion was too low. They mention multiple times how low the chances of a pod malfunction are (Jim's is the first in history), and then it happens twice? Jim's med-scanned him but Gus' didn't (?) so he had 610 things wrong with him. So he woke up dying 2: Gus' existence has only one objective: to give Jim the armband. 3: Before anything else can happen with Gus, he dies conveniently. Gus' existence had no other reason. We didn't care about him emotionally. He didn't advance the plot. He provided no new info or answers to questions. (failure cascade is easily discernible by Jim once he has access to the bridge) It would have been easier to just let Jim find an armband/access another way. DXM: holder of the macguffin magically appears (pod failure) delivers the macguffin (armband + code) goes away (dies without explanation) it's downright shameful.
Suggested correction: This is all your opinion of a plotline - admittedly, an utterly lame one - not a film mistake. Film criticism and error spotting are two different things.
In addition, the statistics about pod malfunctions obviously referred to spontaneous malfunctions, which had never happened. These malfunctions in the movie, however, were not spontaneous – they were caused by catastrophic failure of the ship itself due to an asteroid hit.
Stupidity: Project Pegasus is a billion dollar structure with no security guards besides the couple dudes Fury shows the badge to at the entrance, no video surveillance, and once SHIELD arrives nobody has to even open a locked door anymore.
Suggested correction: First of all, Fury was allowed in as it's a government facility and he works for the government and as a SHIELD agent is allowed access. It's inside a mountain and they passed multiple security guards as they drove in, armed guards. Everything is thumb prints and cameras which was quite elaborate for that time. To say they lack in security is quite an understatement. SHIELD has quite some authority and can easily take control in the Pegasus project facility.
You are right about the main entrance being truly secure both for guards and strategic position. The problem is that they are free to just roam the facility for an hour, blast through doors, not a soul in sight, no evidence of camera monitoring the inside of the structure, and once the gag of the pad is finished, no door requires it. Actually, funnily enough you can see a guard of the place opening the elevator for Fury and the supervisor, as if the thumprint scan was needed to even get into the elevator itself, but Keller then just walks into the archive just fine (from a different door than the one Vers blasted). There are keypads to exit places (for instance the hangar, when the agents in pursuit break through the door you can see a keypad on the wall) but only when it's convenient (Vers and Fury walked through that same door with no problem, not to mention the fact that the whole stairs seem to have none, which is funny for a place that has keypads both sides of doors).
Stupidity: In a flashback scene, a mother, father and daughter are taking pictures of Norm and two other polar bears. The daughter decides to run up to the three polar bears, but the parents appear to do nothing about it. The polar bears could have been a threat to their daughter for all they knew. (00:04:25)
Stupidity: Harrigan leaves his partner's badge on his grave where anyone could take it and use it to impersonate a cop or abuse it in other ways. (00:50:15)
Stupidity: The system prompts a message for the bank clerk saying that the subject trying to withdraw cash is armed and dangerous and to alert the local authorities. It also alerts the 'subjects' themselves though, since it beeps a persistent alarm tone! Seems a rather poorly designed system that would endanger the staff. (00:50:10)
Stupidity: After Noah shoots the Humanity Bureau vehicle following them, they continue down the road and stop at an old abandoned building that still has some sort of running water in it. Lucas has to go to the bathroom so his mother just lets him wander off by himself to find a restroom. She doesn't go with him or make sure he's fine. And this is in an area where they know that most of the residents are hostile, and they are being chased by the Humanity Bureau. Noah even calls her out on the stupidity of her letting Lucas go by himself and she claims it's because he needed to do number 2 and that Lucas insisted and he's not a little kid any more... Which doesn't excuse the stupidity of the action of letting an 11 year old go by himself to find a bathroom in such a situation. And ultimately it does lead to him getting found by Agent Westinghouse. (01:08:30)