Continuity mistake: S6 E12 Consequences. In the opening scene, a victim is being chased through a wooded area with his hands tied behind his back with duct tape and duct tape over his mouth. He hides briefly behind a wall and emerges with his hands free and no duct tape on his mouth.
God Complex - S5-E23
Continuity mistake: The chase scene when Maggie, Tiff, and A are chasing the suspect is a total mess. Maggie radios in to say "he ran down the subway", but he doesn't and they pursue him in the streets. Almost immediately, the suspect hijacks a car three blocks away. They locate him in Queens, but now it's night and raining. However, when the chase began, it was bright daylight and clear. Maggie chases him into a crypt, and in the last scene, daylight is shining through a window.
Visible crew/equipment: When the team of Special Agents are at the auto shop in Red Hook, just as Scola says, "Ethan Chen, you're under arrest," there's a visible pink nylon T-marker on the sidewalk. (00:20:15)
Prodigal Son - S5-E3
Visible crew/equipment: After Agent Hobbs reads the text that Zack sent to Clayton, Jubal tells ADIC Reynolds they need to evacuate Chapman, and in the next shot facing Reynolds there's an orange T-mark taped to the floor behind him. (00:19:35)
Continuity mistake: Early in the show when Vince is driving to the hospital after he is wounded by gunfire, he gets out of the car twice.
Continuity mistake: Early in the episode in the aftermath of the shooting in the pawn shop in which the two glass doors have been shattered and all glass has fallen, there are scenes with large sections of broken glass in the doors.
Plot hole: When Scola and Nina enter the suspect's apartment and begin the search, Nina, before she enters one of the rooms says to Scola " come in here you should see this" indicating that she was aware of something important in a room that she had not yet been in.
