Revealing mistake: In episode 5, when the Doctor kills the Primord with the fire extinguisher, he says 'he's dead this time' but the Primord is breathing. (00:07:10)
Revealing mistake: In episode 3, when the Doctor is squaring off against the drooling madman, the madman is inside the perimeter railings. When the soldiers shoot him and he 'falls', however, he has moved outside the railings, enabling the stuntman to jump safely. (00:10:40)
Revealing mistake: In episode 6, when the Brigade Leader shoots the Primord Stahlmann, he falls down but no bullet holes are made in his costume. Thanks to Producer Barry Letts for spotting this one on the DVD commentary. (00:17:00)
Revealing mistake: In episode 6, during the generally poor fight sequence between the Brigade Leader and Greg Sutton, Greg's first punch to the face misses the Brigade Leader by miles. (00:19:10)
Revealing mistake: In episode one, a wall wobbles as Benton hammers a nail into it.
Revealing mistake: When Stahlman is killed - the second time - the shot of his green primord face reveals the actor's unpainted neck under his beard.
Answer: It was never destroyed on-screen; it was intact at the end of the TV movie, and destroyed by the start of the 2005 series. It was destroyed in the novel "The Ancestor Cell," but in a completely different manner to what happened in the series.
DaveJB